Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_2619 | rhtA | DR97_2619 | DR97_433 | annotation not available | annotation not available | 0.608 |
| DR97_435 | DR97_436 | DR97_435 | DR97_436 | annotation not available | annotation not available | 0.717 |
| DR97_435 | rhtA | DR97_435 | DR97_433 | annotation not available | annotation not available | 0.722 |
| DR97_436 | DR97_435 | DR97_436 | DR97_435 | annotation not available | annotation not available | 0.717 |
| DR97_436 | rhtA | DR97_436 | DR97_433 | annotation not available | annotation not available | 0.525 |
| IutA | rhtA | DR97_2011 | DR97_433 | tonB-siderophor: TonB-dependent siderophore receptor family protein | annotation not available | 0.483 |
| YeaS | rhtA | DR97_2101 | DR97_433 | Putative membrane protein PA4757; 2A76: homoserine/Threonine efflux family protein | annotation not available | 0.636 |
| cntO | rhtA | DR97_2187 | DR97_433 | Tonb-dependent siderophore receptor family protein; Transports the metallophore pseudopaline, which is involved in the acquisition of nickel and zinc, and thus enables bacterial growth inside the host, where metal access is limited. Is probably involved in the import of pseudopaline-metal complexes | annotation not available | 0.573 |
| cspA | rhtA | DR97_4665 | DR97_433 | annotation not available | annotation not available | 0.487 |
| ilvA1 | ilvA2 | DR97_3296 | DR97_468 | Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA | Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA | 0.802 |
| ilvA1 | rhtA | DR97_3296 | DR97_433 | Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA | annotation not available | 0.413 |
| ilvA2 | ilvA1 | DR97_468 | DR97_3296 | Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA | Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA | 0.802 |
| ilvA2 | rhtA | DR97_468 | DR97_433 | Threonine ammonia-lyase, biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA | annotation not available | 0.422 |
| pvdH | rhtA | DR97_6020 | DR97_433 | 2,4-diaminobutyrate 4-transaminase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | annotation not available | 0.672 |
| rhtA | DR97_2619 | DR97_433 | DR97_2619 | annotation not available | annotation not available | 0.608 |
| rhtA | DR97_435 | DR97_433 | DR97_435 | annotation not available | annotation not available | 0.722 |
| rhtA | DR97_436 | DR97_433 | DR97_436 | annotation not available | annotation not available | 0.525 |
| rhtA | IutA | DR97_433 | DR97_2011 | annotation not available | tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.483 |
| rhtA | YeaS | DR97_433 | DR97_2101 | annotation not available | Putative membrane protein PA4757; 2A76: homoserine/Threonine efflux family protein | 0.636 |
| rhtA | cntO | DR97_433 | DR97_2187 | annotation not available | Tonb-dependent siderophore receptor family protein; Transports the metallophore pseudopaline, which is involved in the acquisition of nickel and zinc, and thus enables bacterial growth inside the host, where metal access is limited. Is probably involved in the import of pseudopaline-metal complexes | 0.573 |
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