STRINGSTRING
metR protein (Pseudomonas aeruginosa) - STRING interaction network
"metR" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metRannotation not available (306 aa)    
Predicted Functional Partners:
metE
met_syn_B12ind- 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (766 aa)
 
   
  0.969
metF
Fadh2- 5,10-methylenetetrahydrofolate reductase (282 aa)
   
   
  0.869
metH
metH- methionine synthase (1234 aa)
     
   
  0.778
metZ
O_suc_HS_sulf- O-succinylhomoserine sulfhydrylase (403 aa)
     
   
  0.714
metW
metW- methionine biosynthesis protein MetW (206 aa)
     
 
  0.656
glyA1
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism (417 aa)
           
  0.641
metC
annotation not available (394 aa)
     
   
  0.637
artJ
annotation not available (250 aa)
           
  0.602
ybdL
annotation not available (382 aa)
     
   
  0.600
lysC
Aspartokinase; Asp_kin_monofn- aspartate kinase, monofunctional class; Belongs to the aspartokinase family (412 aa)
   
   
  0.590
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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