STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_4510Hypothetical protein; DUF2790 domain-containing protein (89 aa)    
Predicted Functional Partners:
DR97_4362
Hypothetical protein; Uncharacterized protein
  
     0.780
DR97_867
Hypothetical protein; Acetyl-CoA carboxylase alpha subunit
  
     0.766
DR97_701
Conserved hypothetical protein
  
     0.755
DR97_2711
annotation not available
  
     0.754
DR97_1177
Hypothetical protein; Uncharacterized protein
  
     0.748
DR97_5069
annotation not available
  
     0.736
DR97_5202
Hypothetical protein; Acetyl-CoA carboxylase alpha subunit
  
     0.725
DR97_3246
Hypothetical protein; DUF2292 domain-containing protein
  
     0.723
DR97_1716
Hypothetical protein; Uncharacterized protein
  
     0.702
DR97_4894
Hypothetical protein; Putative membrane protein
  
     0.691
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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