Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ApbE | nosD | DR97_4945 | DR97_4529 | Putative thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein | Copper abc transporter periplasmic substrate-binding protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY | 0.427 |
ApbE | nosR | DR97_4945 | DR97_4531 | Putative thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein | Nosr/niri family transcriptional regulator, nitrous oxide reductase regulator; Transcriptional activator of the nitrous-oxide reductase gene NosZ | 0.939 |
ApbE | nosY | DR97_4945 | DR97_4527 | Putative thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein | Cu-processing system permease protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY | 0.456 |
ApbE | nosZ | DR97_4945 | DR97_4530 | Putative thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein | Nitrous-oxide reductase, tat-dependent; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide | 0.441 |
dnr | nirN | DR97_3495 | DR97_3477 | annotation not available | annotation not available | 0.489 |
dnr | nirS | DR97_3495 | DR97_3487 | annotation not available | annotation not available | 0.913 |
dnr | norB | DR97_3495 | DR97_3492 | annotation not available | Nitric oxide reductase subunit b; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen reduction is probably coupled to electron transport phosphorylation (By similarity) | 0.805 |
dnr | nosD | DR97_3495 | DR97_4529 | annotation not available | Copper abc transporter periplasmic substrate-binding protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY | 0.409 |
dnr | nosL | DR97_3495 | DR97_4526 | annotation not available | annotation not available | 0.513 |
dnr | nosR | DR97_3495 | DR97_4531 | annotation not available | Nosr/niri family transcriptional regulator, nitrous oxide reductase regulator; Transcriptional activator of the nitrous-oxide reductase gene NosZ | 0.925 |
dnr | nosY | DR97_3495 | DR97_4527 | annotation not available | Cu-processing system permease protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY | 0.477 |
dnr | nosZ | DR97_3495 | DR97_4530 | annotation not available | Nitrous-oxide reductase, tat-dependent; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide | 0.905 |
nirN | dnr | DR97_3477 | DR97_3495 | annotation not available | annotation not available | 0.489 |
nirN | nirS | DR97_3477 | DR97_3487 | annotation not available | annotation not available | 0.907 |
nirN | norB | DR97_3477 | DR97_3492 | annotation not available | Nitric oxide reductase subunit b; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen reduction is probably coupled to electron transport phosphorylation (By similarity) | 0.898 |
nirN | nosD | DR97_3477 | DR97_4529 | annotation not available | Copper abc transporter periplasmic substrate-binding protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY | 0.700 |
nirN | nosF | DR97_3477 | DR97_4528 | annotation not available | annotation not available | 0.547 |
nirN | nosL | DR97_3477 | DR97_4526 | annotation not available | annotation not available | 0.669 |
nirN | nosR | DR97_3477 | DR97_4531 | annotation not available | Nosr/niri family transcriptional regulator, nitrous oxide reductase regulator; Transcriptional activator of the nitrous-oxide reductase gene NosZ | 0.920 |
nirN | nosY | DR97_3477 | DR97_4527 | annotation not available | Cu-processing system permease protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY | 0.611 |
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