araQ protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

araQ

annotation not available (281 aa)

Predicted Functional Partners:

ugpA

0.999

ugpC

0.995

DR97_4746

0.993

smoK

0.848

lacF

0.806

mtlE

0.770

oprB1

0.662

gltP

0.628

potA5

0.554

putP

0.554

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4746	araQ	DR97_4746	DR97_4748	annotation not available	annotation not available	0.993
DR97_4746	lacF	DR97_4746	DR97_6093	annotation not available	annotation not available	0.609
DR97_4746	mtlE	DR97_4746	DR97_6094	annotation not available	annotation not available	0.407
DR97_4746	oprB1	DR97_4746	DR97_4750	annotation not available	annotation not available	0.462
DR97_4746	potA5	DR97_4746	DR97_3572	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.449
DR97_4746	smoK	DR97_4746	DR97_6091	annotation not available	annotation not available	0.650
DR97_4746	ugpA	DR97_4746	DR97_4747	annotation not available	annotation not available	0.990
DR97_4746	ugpC	DR97_4746	DR97_4749	annotation not available	annotation not available	0.973
araQ	DR97_4746	DR97_4748	DR97_4746	annotation not available	annotation not available	0.993
araQ	gltP	DR97_4748	DR97_2858	annotation not available	Probable proton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate	0.628
araQ	lacF	DR97_4748	DR97_6093	annotation not available	annotation not available	0.806
araQ	mtlE	DR97_4748	DR97_6094	annotation not available	annotation not available	0.770
araQ	oprB1	DR97_4748	DR97_4750	annotation not available	annotation not available	0.662
araQ	potA5	DR97_4748	DR97_3572	annotation not available	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system	0.554
araQ	putP	DR97_4748	DR97_1200	annotation not available	na_Pro_sym- sodium/proline symporter; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.554
araQ	smoK	DR97_4748	DR97_6091	annotation not available	annotation not available	0.848
araQ	ugpA	DR97_4748	DR97_4747	annotation not available	annotation not available	0.999
araQ	ugpC	DR97_4748	DR97_4749	annotation not available	annotation not available	0.995
gltP	araQ	DR97_2858	DR97_4748	Probable proton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate	annotation not available	0.628
gltP	putP	DR97_2858	DR97_1200	Probable proton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate	na_Pro_sym- sodium/proline symporter; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.501

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