Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2595 | YcgL | DR97_2595 | DR97_499 | annotation not available | annotation not available | 0.507 |
DR97_3756 | YcgL | DR97_3756 | DR97_499 | LOG family protein ygdH; Protein containing a predicted nucleotide-binding domain of Rossmann fold | annotation not available | 0.550 |
DR97_3756 | hflD | DR97_3756 | DR97_5335 | LOG family protein ygdH; Protein containing a predicted nucleotide-binding domain of Rossmann fold | High frequency lysogenization protein HflD homolog | 0.552 |
DR97_4968 | DR97_5332 | DR97_4968 | DR97_5332 | Uncharacterized protein; Metal-binding protein | annotation not available | 0.417 |
DR97_4968 | YcgL | DR97_4968 | DR97_499 | Uncharacterized protein; Metal-binding protein | annotation not available | 0.527 |
DR97_4968 | dsbC | DR97_4968 | DR97_4139 | Uncharacterized protein; Metal-binding protein | Thiol:disulfide interchange protein dsbc; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process | 0.663 |
DR97_4968 | hflD | DR97_4968 | DR97_5335 | Uncharacterized protein; Metal-binding protein | High frequency lysogenization protein HflD homolog | 0.570 |
DR97_4968 | zipA | DR97_4968 | DR97_408 | Uncharacterized protein; Metal-binding protein | Cell division protein zipa; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | 0.483 |
DR97_498 | YcgL | DR97_498 | DR97_499 | annotation not available | annotation not available | 0.541 |
DR97_498 | rnd | DR97_498 | DR97_500 | annotation not available | Ribonuclease d; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides | 0.630 |
DR97_501 | YcgL | DR97_501 | DR97_499 | annotation not available | annotation not available | 0.585 |
DR97_501 | rnd | DR97_501 | DR97_500 | annotation not available | Ribonuclease d; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides | 0.588 |
DR97_5332 | DR97_4968 | DR97_5332 | DR97_4968 | annotation not available | Uncharacterized protein; Metal-binding protein | 0.417 |
DR97_5332 | YcgL | DR97_5332 | DR97_499 | annotation not available | annotation not available | 0.533 |
DR97_5332 | dsbC | DR97_5332 | DR97_4139 | annotation not available | Thiol:disulfide interchange protein dsbc; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process | 0.460 |
DR97_5332 | hflD | DR97_5332 | DR97_5335 | annotation not available | High frequency lysogenization protein HflD homolog | 0.825 |
YcgL | DR97_2595 | DR97_499 | DR97_2595 | annotation not available | annotation not available | 0.507 |
YcgL | DR97_3756 | DR97_499 | DR97_3756 | annotation not available | LOG family protein ygdH; Protein containing a predicted nucleotide-binding domain of Rossmann fold | 0.550 |
YcgL | DR97_4968 | DR97_499 | DR97_4968 | annotation not available | Uncharacterized protein; Metal-binding protein | 0.527 |
YcgL | DR97_498 | DR97_499 | DR97_498 | annotation not available | annotation not available | 0.541 |
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