yeaC protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

yeaC

annotation not available (305 aa)

Predicted Functional Partners:

DR97_5067

0.964

DR97_5068

0.960

DR97_5069

0.845

ctaG

0.715

DR97_4865

0.661

xdhC

0.649

DR97_5070

0.606

gpW

0.554

DR97_4863

0.548

pyrF

0.459

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4863	DR97_4865	DR97_4863	DR97_4865	Uncharacterized protein	DUF58 domain-containing protein	0.982
DR97_4863	yeaC	DR97_4863	DR97_5066	Uncharacterized protein	annotation not available	0.548
DR97_4865	DR97_4863	DR97_4865	DR97_4863	DUF58 domain-containing protein	Uncharacterized protein	0.982
DR97_4865	yeaC	DR97_4865	DR97_5066	DUF58 domain-containing protein	annotation not available	0.661
DR97_5067	DR97_5068	DR97_5067	DR97_5068	Uncharacterized protein	annotation not available	0.990
DR97_5067	DR97_5069	DR97_5067	DR97_5069	Uncharacterized protein	annotation not available	0.845
DR97_5067	DR97_5070	DR97_5067	DR97_5070	Uncharacterized protein	annotation not available	0.617
DR97_5067	pyrF	DR97_5067	DR97_5065	Uncharacterized protein	Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily	0.459
DR97_5067	yeaC	DR97_5067	DR97_5066	Uncharacterized protein	annotation not available	0.964
DR97_5068	DR97_5067	DR97_5068	DR97_5067	annotation not available	Uncharacterized protein	0.990
DR97_5068	DR97_5069	DR97_5068	DR97_5069	annotation not available	annotation not available	0.847
DR97_5068	DR97_5070	DR97_5068	DR97_5070	annotation not available	annotation not available	0.618
DR97_5068	pyrF	DR97_5068	DR97_5065	annotation not available	Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily	0.459
DR97_5068	yeaC	DR97_5068	DR97_5066	annotation not available	annotation not available	0.960
DR97_5069	DR97_5067	DR97_5069	DR97_5067	annotation not available	Uncharacterized protein	0.845
DR97_5069	DR97_5068	DR97_5069	DR97_5068	annotation not available	annotation not available	0.847
DR97_5069	DR97_5070	DR97_5069	DR97_5070	annotation not available	annotation not available	0.675
DR97_5069	pyrF	DR97_5069	DR97_5065	annotation not available	Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily	0.449
DR97_5069	yeaC	DR97_5069	DR97_5066	annotation not available	annotation not available	0.845
DR97_5070	DR97_5067	DR97_5070	DR97_5067	annotation not available	Uncharacterized protein	0.617

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