erfK protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurence

Coexpression

Experiments

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[Homology]

Score

erfK

annotation not available (323 aa)

Predicted Functional Partners:

DR97_4120

0.801

nreC_1

0.719

DR97_4099

0.719

DR97_5086

0.661

nreC

0.550

tesA

0.518

ssuE

0.438

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4099	erfK	DR97_4099	DR97_5087	annotation not available	annotation not available	0.719
DR97_4099	nreC_1	DR97_4099	DR97_538	annotation not available	annotation not available	0.482
DR97_4120	erfK	DR97_4120	DR97_5087	annotation not available	annotation not available	0.801
DR97_5086	erfK	DR97_5086	DR97_5087	Uncharacterized protein	annotation not available	0.661
DR97_5086	tesA	DR97_5086	DR97_5085	Uncharacterized protein	annotation not available	0.663
erfK	DR97_4099	DR97_5087	DR97_4099	annotation not available	annotation not available	0.719
erfK	DR97_4120	DR97_5087	DR97_4120	annotation not available	annotation not available	0.801
erfK	DR97_5086	DR97_5087	DR97_5086	annotation not available	Uncharacterized protein	0.661
erfK	nreC	DR97_5087	DR97_5454	annotation not available	annotation not available	0.550
erfK	nreC_1	DR97_5087	DR97_538	annotation not available	annotation not available	0.719
erfK	ssuE	DR97_5087	DR97_4475	annotation not available	FMN_reduc_SsuE- FMN reductase	0.438
erfK	tesA	DR97_5087	DR97_5085	annotation not available	annotation not available	0.518
nreC	erfK	DR97_5454	DR97_5087	annotation not available	annotation not available	0.550
nreC_1	DR97_4099	DR97_538	DR97_4099	annotation not available	annotation not available	0.482
nreC_1	erfK	DR97_538	DR97_5087	annotation not available	annotation not available	0.719
ssuE	erfK	DR97_4475	DR97_5087	FMN_reduc_SsuE- FMN reductase	annotation not available	0.438
tesA	DR97_5086	DR97_5085	DR97_5086	annotation not available	Uncharacterized protein	0.663
tesA	erfK	DR97_5085	DR97_5087	annotation not available	annotation not available	0.518

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

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