DR97_5185 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_5185

annotation not available (31 aa)

Predicted Functional Partners:

DR97_5184

0.655

crt

0.477

DR97_5182

0.477

DR97_5186

0.464

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_5182	DR97_5184	DR97_5182	DR97_5184	annotation not available	annotation not available	0.615
DR97_5182	DR97_5185	DR97_5182	DR97_5185	annotation not available	annotation not available	0.477
DR97_5182	crt	DR97_5182	DR97_5183	annotation not available	annotation not available	0.869
DR97_5184	DR97_5182	DR97_5184	DR97_5182	annotation not available	annotation not available	0.615
DR97_5184	DR97_5185	DR97_5184	DR97_5185	annotation not available	annotation not available	0.655
DR97_5184	crt	DR97_5184	DR97_5183	annotation not available	annotation not available	0.719
DR97_5185	DR97_5182	DR97_5185	DR97_5182	annotation not available	annotation not available	0.477
DR97_5185	DR97_5184	DR97_5185	DR97_5184	annotation not available	annotation not available	0.655
DR97_5185	DR97_5186	DR97_5185	DR97_5186	annotation not available	Uncharacterized protein; Dyp_perox_fam- Dyp-type peroxidase family protein	0.464
DR97_5185	crt	DR97_5185	DR97_5183	annotation not available	annotation not available	0.477
DR97_5186	DR97_5185	DR97_5186	DR97_5185	Uncharacterized protein; Dyp_perox_fam- Dyp-type peroxidase family protein	annotation not available	0.464
crt	DR97_5182	DR97_5183	DR97_5182	annotation not available	annotation not available	0.869
crt	DR97_5184	DR97_5183	DR97_5184	annotation not available	annotation not available	0.719
crt	DR97_5185	DR97_5183	DR97_5185	annotation not available	annotation not available	0.477

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