Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_5247 | DR97_5895 | DR97_5247 | DR97_5895 | annotation not available | annotation not available | 0.578 |
DR97_5247 | pcrG | DR97_5247 | DR97_182 | annotation not available | lcrG_PcrG: type III secretion protein LcrG | 0.552 |
DR97_5247 | pscH | DR97_5247 | DR97_166 | annotation not available | Type III export protein PscH; type_III_yopR: type III secretion effector, YopR family | 0.562 |
DR97_5247 | pscI | DR97_5247 | DR97_165 | annotation not available | yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain | 0.541 |
DR97_5247 | pscJ | DR97_5247 | DR97_164 | annotation not available | III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family | 0.561 |
DR97_5247 | pscL | DR97_5247 | DR97_162 | annotation not available | Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family | 0.604 |
DR97_5247 | rfbD | DR97_5247 | DR97_2530 | annotation not available | DTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | 0.546 |
DR97_5247 | yopB | DR97_5247 | DR97_179 | annotation not available | annotation not available | 0.574 |
DR97_5247 | yscU | DR97_5247 | DR97_197 | annotation not available | annotation not available | 0.561 |
DR97_5247 | yscY | DR97_5247 | DR97_185 | annotation not available | annotation not available | 0.544 |
DR97_5895 | DR97_5247 | DR97_5895 | DR97_5247 | annotation not available | annotation not available | 0.578 |
DR97_5895 | pcrG | DR97_5895 | DR97_182 | annotation not available | lcrG_PcrG: type III secretion protein LcrG | 0.493 |
DR97_5895 | pscH | DR97_5895 | DR97_166 | annotation not available | Type III export protein PscH; type_III_yopR: type III secretion effector, YopR family | 0.529 |
DR97_5895 | pscI | DR97_5895 | DR97_165 | annotation not available | yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain | 0.491 |
DR97_5895 | pscJ | DR97_5895 | DR97_164 | annotation not available | III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family | 0.465 |
DR97_5895 | pscL | DR97_5895 | DR97_162 | annotation not available | Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family | 0.440 |
DR97_5895 | rfbD | DR97_5895 | DR97_2530 | annotation not available | DTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose | 0.510 |
DR97_5895 | yopB | DR97_5895 | DR97_179 | annotation not available | annotation not available | 0.519 |
DR97_5895 | yscU | DR97_5895 | DR97_197 | annotation not available | annotation not available | 0.526 |
DR97_5895 | yscY | DR97_5895 | DR97_185 | annotation not available | annotation not available | 0.524 |
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