dmpA protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

dmpA

annotation not available (366 aa)

Predicted Functional Partners:

dppC

0.949

DR97_537

0.903

bapA

0.770

dppB

0.724

nreC_1

0.692

birA

0.570

fliY_1

0.564

inh

0.558

atuA

0.499

gltI3

0.477

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_537	dmpA	DR97_537	DR97_536	annotation not available	annotation not available	0.903
DR97_537	nreC_1	DR97_537	DR97_538	annotation not available	annotation not available	0.883
atuA	dmpA	DR97_5055	DR97_536	Uncharacterized protein	annotation not available	0.499
atuA	fliY_1	DR97_5055	DR97_2431	Uncharacterized protein	Amino acid ABC transporter substrate-binding protein; BINDING COMPONENT OF ABC TRANSPORTER; Belongs to the bacterial solute-binding protein 3 family	0.853
atuA	gltI3	DR97_5055	DR97_452	Uncharacterized protein	annotation not available	0.853
bapA	dmpA	DR97_4707	DR97_536	annotation not available	annotation not available	0.770
birA	dmpA	DR97_3627	DR97_536	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5’-adenylate (BirA-bio- 5’-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon	annotation not available	0.570
dmpA	DR97_537	DR97_536	DR97_537	annotation not available	annotation not available	0.903
dmpA	atuA	DR97_536	DR97_5055	annotation not available	Uncharacterized protein	0.499
dmpA	bapA	DR97_536	DR97_4707	annotation not available	annotation not available	0.770
dmpA	birA	DR97_536	DR97_3627	annotation not available	Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5’-adenylate (BirA-bio- 5’-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon	0.570
dmpA	dppB	DR97_536	DR97_1682	annotation not available	annotation not available	0.724
dmpA	dppC	DR97_536	DR97_1683	annotation not available	annotation not available	0.949
dmpA	fliY_1	DR97_536	DR97_2431	annotation not available	Amino acid ABC transporter substrate-binding protein; BINDING COMPONENT OF ABC TRANSPORTER; Belongs to the bacterial solute-binding protein 3 family	0.564
dmpA	gltI3	DR97_536	DR97_452	annotation not available	annotation not available	0.477
dmpA	inh	DR97_536	DR97_687	annotation not available	annotation not available	0.558
dmpA	nreC_1	DR97_536	DR97_538	annotation not available	annotation not available	0.692
dppB	dmpA	DR97_1682	DR97_536	annotation not available	annotation not available	0.724
dppB	dppC	DR97_1682	DR97_1683	annotation not available	annotation not available	0.999
dppC	dmpA	DR97_1683	DR97_536	annotation not available	annotation not available	0.949

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