STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_5447ccmA: heme ABC exporter, ATP-binding protein CcmA (589 aa)    
Predicted Functional Partners:
DR97_5448
annotation not available
 
  0.982
ybhR
annotation not available
 
  0.980
DR97_5446
Membrane fusion protein; RND_mfp: efflux transporter, RND family, MFP subunit
  
 0.979
rpsI
Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family
    
  0.946
yhhJ
annotation not available
 0.866
DR97_5450
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
   
 0.859
YhiI
Uncharacterized protein; RND_mfp: efflux transporter, RND family, MFP subunit
  
 0.806
rbsC
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
  
 0.803
DR97_5445
annotation not available
 
     0.801
rpsE
Small subunit ribosomal protein s5; With S4 and S12 plays an important role in translational accuracy
   
  0.716
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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