linC_1 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

linC_1

annotation not available (255 aa)

Predicted Functional Partners:

DR97_5615

0.870

DR97_5617

0.836

mmsA1

0.814

mmsA3

0.802

iolA2

0.796

mmgC3

0.769

pnp

0.723

aldA1

0.605

aldA3

0.605

DR97_2350

0.571

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2350	linC_1	DR97_2350	DR97_5616	asn_synth_AEB: asparagine synthase	annotation not available	0.571
DR97_5615	DR97_5617	DR97_5615	DR97_5617	annotation not available	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	0.929
DR97_5615	aldA1	DR97_5615	DR97_3845	annotation not available	annotation not available	0.925
DR97_5615	aldA3	DR97_5615	DR97_5863	annotation not available	annotation not available	0.925
DR97_5615	iolA2	DR97_5615	DR97_3087	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.926
DR97_5615	linC_1	DR97_5615	DR97_5616	annotation not available	annotation not available	0.870
DR97_5615	mmgC3	DR97_5615	DR97_5618	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.737
DR97_5615	mmsA1	DR97_5615	DR97_4369	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.926
DR97_5615	mmsA3	DR97_5615	DR97_1237	annotation not available	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.926
DR97_5617	DR97_5615	DR97_5617	DR97_5615	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.929
DR97_5617	iolA2	DR97_5617	DR97_3087	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.688
DR97_5617	linC_1	DR97_5617	DR97_5616	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.836
DR97_5617	mmgC3	DR97_5617	DR97_5618	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	acyl-CoA dehydrogenase, N-terminal domain protein	0.906
DR97_5617	mmsA1	DR97_5617	DR97_4369	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.688
DR97_5617	mmsA3	DR97_5617	DR97_1237	acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	MMSDH: methylmalonate-semialdehyde dehydrogenase	0.688
aldA1	DR97_5615	DR97_3845	DR97_5615	annotation not available	annotation not available	0.925
aldA1	aldA3	DR97_3845	DR97_5863	annotation not available	annotation not available	0.801
aldA1	linC_1	DR97_3845	DR97_5616	annotation not available	annotation not available	0.605
aldA3	DR97_5615	DR97_5863	DR97_5615	annotation not available	annotation not available	0.925
aldA3	aldA1	DR97_5863	DR97_3845	annotation not available	annotation not available	0.801

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