DR97_5800 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_5800

annotation not available (310 aa)

Predicted Functional Partners:

DR97_5801

0.593

yidD

0.470

chpD

0.451

DR97_5799

0.420

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_5799	DR97_5800	DR97_5799	DR97_5800	annotation not available	annotation not available	0.420
DR97_5800	DR97_5799	DR97_5800	DR97_5799	annotation not available	annotation not available	0.420
DR97_5800	DR97_5801	DR97_5800	DR97_5801	annotation not available	Uncharacterized protein	0.593
DR97_5800	chpD	DR97_5800	DR97_3384	annotation not available	annotation not available	0.451
DR97_5800	yidD	DR97_5800	DR97_5802	annotation not available	Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane	0.470
DR97_5801	DR97_5800	DR97_5801	DR97_5800	Uncharacterized protein	annotation not available	0.593
DR97_5801	yidD	DR97_5801	DR97_5802	Uncharacterized protein	Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane	0.655
chpD	DR97_5800	DR97_3384	DR97_5800	annotation not available	annotation not available	0.451
yidD	DR97_5800	DR97_5802	DR97_5800	Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane	annotation not available	0.470
yidD	DR97_5801	DR97_5802	DR97_5801	Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane	Uncharacterized protein	0.655

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