STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdhABelongs to the short-chain dehydrogenases/reductases (SDR) family (256 aa)    
Predicted Functional Partners:
dhcB
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit
 
 0.950
AcsA
Acetoacetyl-coenzyme A synthetase; ac_ac_CoA_syn: acetoacetate-CoA ligase
  
 
 0.950
dhcA
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit
 
 
 0.943
liuE
Involved in the L-leucine, isovalerate and acyclic monoterpene catabolism. Catalyzes the cleavage of 3-hydroxy-3- methylglutaryl-CoA (HMG-CoA) to yield acetyl-CoA and acetoacetate. It can also catalyze the cleavage of 3-hydroxy-3-isohexenylglutaryl-CoA (HIHG_CoA) to yield 7-methyl-3-oxooct-6-enoyl-CoA and acetate.
   
 
 0.917
DR97_5844
annotation not available
 
  
 0.906
phaF
Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1: poly(hydroxyalkanoate) granule-associated domain protein
   
  
 0.856
osmC
osmo_induc_OsmC: peroxiredoxin, OsmC subfamily protein
   
  
 0.695
ambC
annotation not available
   
  
 0.583
DR97_927
annotation not available
 
 0.535
lptD
Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
   
  
 0.499
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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