Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1898 | DR97_1899 | DR97_1898 | DR97_1899 | annotation not available | annotation not available | 0.968 |
DR97_1898 | OmpH | DR97_1898 | DR97_2327 | annotation not available | type_I_sec_TolC: type I secretion outer membrane , TolC family protein | 0.660 |
DR97_1898 | lolD | DR97_1898 | DR97_4952 | annotation not available | Putative lipoprotein releasing system atp-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner | 0.567 |
DR97_1898 | macB | DR97_1898 | DR97_6042 | annotation not available | Macrolide transport system atp-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides | 0.714 |
DR97_1898 | opmQ | DR97_1898 | DR97_6041 | annotation not available | Uncharacterized protein; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein | 0.710 |
DR97_1898 | pvdR | DR97_1898 | DR97_6043 | annotation not available | Membrane fusion protein, macrolide-specific efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.922 |
DR97_1899 | DR97_1898 | DR97_1899 | DR97_1898 | annotation not available | annotation not available | 0.968 |
DR97_1899 | OmpH | DR97_1899 | DR97_2327 | annotation not available | type_I_sec_TolC: type I secretion outer membrane , TolC family protein | 0.925 |
DR97_1899 | lolD | DR97_1899 | DR97_4952 | annotation not available | Putative lipoprotein releasing system atp-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner | 0.440 |
DR97_1899 | macB | DR97_1899 | DR97_6042 | annotation not available | Macrolide transport system atp-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides | 0.473 |
DR97_1899 | opmQ | DR97_1899 | DR97_6041 | annotation not available | Uncharacterized protein; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein | 0.662 |
DR97_1899 | pvdR | DR97_1899 | DR97_6043 | annotation not available | Membrane fusion protein, macrolide-specific efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.989 |
DR97_6046 | macB | DR97_6046 | DR97_6042 | annotation not available | Macrolide transport system atp-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides | 0.409 |
DR97_6046 | opmQ | DR97_6046 | DR97_6041 | annotation not available | Uncharacterized protein; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein | 0.670 |
DR97_6046 | pvdH | DR97_6046 | DR97_6020 | annotation not available | 2,4-diaminobutyrate 4-transaminase family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family | 0.891 |
DR97_6046 | pvdQ | DR97_6046 | DR97_6047 | annotation not available | Acyl-homoserine lactone acylase pvdq; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length). Degrades 3-oxo- C12-HSL, one of the two main AHL signal molecules of P.aeruginosa, and thereby functions as a quorum quencher, inhibiting the las quorum- sensing system. Therefore, may enable P.aeruginosa to modulate its own quorum-sensing-dependent pathogenic potential. Also appears to be required [...] | 0.945 |
DR97_6046 | pvdR | DR97_6046 | DR97_6043 | annotation not available | Membrane fusion protein, macrolide-specific efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family | 0.814 |
DR97_6046 | pvdS | DR97_6046 | DR97_6007 | annotation not available | Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily | 0.879 |
OmpH | DR97_1898 | DR97_2327 | DR97_1898 | type_I_sec_TolC: type I secretion outer membrane , TolC family protein | annotation not available | 0.660 |
OmpH | DR97_1899 | DR97_2327 | DR97_1899 | type_I_sec_TolC: type I secretion outer membrane , TolC family protein | annotation not available | 0.925 |
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