oprB3 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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[Homology]

Score

oprB3

annotation not available (435 aa)

Predicted Functional Partners:

oprD3

0.903

oprC

0.877

DR97_4651

0.841

oprF

0.762

oprO

0.756

opdK

0.733

gdhA3

0.690

oprG

0.642

ompR1

0.624

DR97_3197

0.577

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3197	oprB3	DR97_3197	DR97_6142	annotation not available	annotation not available	0.577
DR97_4651	opdK	DR97_4651	DR97_2249	annotation not available	annotation not available	0.853
DR97_4651	oprB3	DR97_4651	DR97_6142	annotation not available	annotation not available	0.841
DR97_4651	oprF	DR97_4651	DR97_109	annotation not available	annotation not available	0.682
gdhA3	oprB3	DR97_6143	DR97_6142	PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family protein	annotation not available	0.690
ompR1	oprB3	DR97_4744	DR97_6142	Transcriptional regulatory , C terminal family protein	annotation not available	0.624
opdK	DR97_4651	DR97_2249	DR97_4651	annotation not available	annotation not available	0.853
opdK	oprB3	DR97_2249	DR97_6142	annotation not available	annotation not available	0.733
opdK	oprF	DR97_2249	DR97_109	annotation not available	annotation not available	0.403
opdK	oprO	DR97_2249	DR97_4650	annotation not available	annotation not available	0.840
oprB3	DR97_3197	DR97_6142	DR97_3197	annotation not available	annotation not available	0.577
oprB3	DR97_4651	DR97_6142	DR97_4651	annotation not available	annotation not available	0.841
oprB3	gdhA3	DR97_6142	DR97_6143	annotation not available	PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family protein	0.690
oprB3	ompR1	DR97_6142	DR97_4744	annotation not available	Transcriptional regulatory , C terminal family protein	0.624
oprB3	opdK	DR97_6142	DR97_2249	annotation not available	annotation not available	0.733
oprB3	oprC	DR97_6142	DR97_4079	annotation not available	Putative copper transport outer membrane porin OprC; tonB-copper: TonB-dependent copper receptor	0.877
oprB3	oprD3	DR97_6142	DR97_5193	annotation not available	annotation not available	0.903
oprB3	oprF	DR97_6142	DR97_109	annotation not available	annotation not available	0.762
oprB3	oprG	DR97_6142	DR97_3801	annotation not available	annotation not available	0.642
oprB3	oprO	DR97_6142	DR97_4650	annotation not available	annotation not available	0.756

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