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rhmD protein (Pseudomonas aeruginosa) - STRING interaction network
"rhmD" - L-rhamnonate dehydratase in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhmDL-rhamnonate dehydratase; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein (391 aa)    
Predicted Functional Partners:
glcD
Putative FAD-linked oxidoreductase; glcD- glycolate oxidase, subunit GlcD (499 aa)
         
  0.864
rhmT
annotation not available (440 aa)
 
 
  0.859
DR97_6214
annotation not available (331 aa)
 
        0.848
DR97_6219
annotation not available (319 aa)
 
     
  0.819
pdxA2
annotation not available (337 aa)
 
   
  0.757
aldH3
annotation not available (527 aa)
 
   
  0.650
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) (328 aa)
         
  0.608
DR97_6220
annotation not available (441 aa)
 
 
  0.595
DR97_6224
annotation not available (315 aa)
 
        0.580
phaJ4
annotation not available (151 aa)
           
  0.555
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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