DR97_6258 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DR97_6258

annotation not available (258 aa)

Predicted Functional Partners:

DR97_6259

0.984

DR97_6255

0.705

DR97_6257

0.623

DR97_6265

0.584

DR97_6253

0.567

DR97_6256

0.564

treY

0.508

nagF

0.498

treZ

0.462

DR97_4656

0.459

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_4656	DR97_6255	DR97_4656	DR97_6255	Putative secreted protein	annotation not available	0.478
DR97_4656	DR97_6258	DR97_4656	DR97_6258	Putative secreted protein	annotation not available	0.459
DR97_4656	DR97_6259	DR97_4656	DR97_6259	Putative secreted protein	Uncharacterized protein	0.491
DR97_4656	DR97_6265	DR97_4656	DR97_6265	Putative secreted protein	Conserved hypothetical protein	0.518
DR97_6253	DR97_6255	DR97_6253	DR97_6255	Uncharacterized protein	annotation not available	0.802
DR97_6253	DR97_6256	DR97_6253	DR97_6256	Uncharacterized protein	Putative membrane protein; phospholipase_D-nuclease N-terminal family protein	0.678
DR97_6253	DR97_6257	DR97_6253	DR97_6257	Uncharacterized protein	Uncharacterized protein	0.793
DR97_6253	DR97_6258	DR97_6253	DR97_6258	Uncharacterized protein	annotation not available	0.567
DR97_6253	DR97_6259	DR97_6253	DR97_6259	Uncharacterized protein	Uncharacterized protein	0.570
DR97_6253	DR97_6265	DR97_6253	DR97_6265	Uncharacterized protein	Conserved hypothetical protein	0.624
DR97_6255	DR97_4656	DR97_6255	DR97_4656	annotation not available	Putative secreted protein	0.478
DR97_6255	DR97_6253	DR97_6255	DR97_6253	annotation not available	Uncharacterized protein	0.802
DR97_6255	DR97_6256	DR97_6255	DR97_6256	annotation not available	Putative membrane protein; phospholipase_D-nuclease N-terminal family protein	0.704
DR97_6255	DR97_6257	DR97_6255	DR97_6257	annotation not available	Uncharacterized protein	0.760
DR97_6255	DR97_6258	DR97_6255	DR97_6258	annotation not available	annotation not available	0.705
DR97_6255	DR97_6259	DR97_6255	DR97_6259	annotation not available	Uncharacterized protein	0.747
DR97_6256	DR97_6253	DR97_6256	DR97_6253	Putative membrane protein; phospholipase_D-nuclease N-terminal family protein	Uncharacterized protein	0.678
DR97_6256	DR97_6255	DR97_6256	DR97_6255	Putative membrane protein; phospholipase_D-nuclease N-terminal family protein	annotation not available	0.704
DR97_6256	DR97_6257	DR97_6256	DR97_6257	Putative membrane protein; phospholipase_D-nuclease N-terminal family protein	Uncharacterized protein	0.803
DR97_6256	DR97_6258	DR97_6256	DR97_6258	Putative membrane protein; phospholipase_D-nuclease N-terminal family protein	annotation not available	0.564

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