Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_5718 | DR97_6268 | DR97_5718 | DR97_6268 | Putative outer membrane protein | annotation not available | 0.469 |
DR97_5718 | DR97_6287 | DR97_5718 | DR97_6287 | Putative outer membrane protein | annotation not available | 0.601 |
DR97_5718 | ku | DR97_5718 | DR97_6276 | Putative outer membrane protein | Ku domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Stimulates rNTP addition to DSB and end joining (ligation) of linear DNA by LigD, on 3'-overhangs and probably also 5'-overhangs and blunt dsDNA breaks. Binds both ends of linear dsDNA protecting it from exonuclease activity | 0.668 |
DR97_5718 | ligD | DR97_5718 | DR97_6291 | Putative outer membrane protein | Bifunctional non-homologous end joining protein ligd; With Ku probably forms a non-homologous end joining (NHEJ) repair enzyme, which repairs dsDNA breaks (DSB) with reduced fidelity. Acts as a DNA ligase on singly nicked dsDNA, fills dsDNA gaps (3- or 4- nucleotide gaps, prefers a 5'-phosphate at the gap distal end, prefers dNTPs over rNTPs) , has DNA-directed DNA polymerase activity (templated primer extension) and DNA-directed RNA polymerase activity , adds 1 or 2 non-templated rNTP (or less well dNTP) to ssDNA or blunt-end dsDNA (primer extension). Has 3' resection activity, removi [...] | 0.483 |
DR97_6268 | DR97_5718 | DR97_6268 | DR97_5718 | annotation not available | Putative outer membrane protein | 0.469 |
DR97_6268 | DR97_6287 | DR97_6268 | DR97_6287 | annotation not available | annotation not available | 0.703 |
DR97_6268 | katE | DR97_6268 | DR97_6280 | annotation not available | Hydroperoxidase ii; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide | 0.532 |
DR97_6287 | DR97_5718 | DR97_6287 | DR97_5718 | annotation not available | Putative outer membrane protein | 0.601 |
DR97_6287 | DR97_6268 | DR97_6287 | DR97_6268 | annotation not available | annotation not available | 0.703 |
DR97_6287 | DR97_6288 | DR97_6287 | DR97_6288 | annotation not available | Putative competence-damaged protein; Belongs to the CinA family | 0.790 |
DR97_6287 | DR97_6289 | DR97_6287 | DR97_6289 | annotation not available | annotation not available | 0.797 |
DR97_6287 | DR97_6290 | DR97_6287 | DR97_6290 | annotation not available | Hypothetical protein; Putative membrane protein; phospholipase_D-nuclease N-terminal family protein | 0.723 |
DR97_6287 | katA | DR97_6287 | DR97_3675 | annotation not available | Catalase; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide | 0.564 |
DR97_6287 | katE | DR97_6287 | DR97_6280 | annotation not available | Hydroperoxidase ii; Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide | 0.684 |
DR97_6287 | ku | DR97_6287 | DR97_6276 | annotation not available | Ku domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Stimulates rNTP addition to DSB and end joining (ligation) of linear DNA by LigD, on 3'-overhangs and probably also 5'-overhangs and blunt dsDNA breaks. Binds both ends of linear dsDNA protecting it from exonuclease activity | 0.744 |
DR97_6287 | ligD | DR97_6287 | DR97_6291 | annotation not available | Bifunctional non-homologous end joining protein ligd; With Ku probably forms a non-homologous end joining (NHEJ) repair enzyme, which repairs dsDNA breaks (DSB) with reduced fidelity. Acts as a DNA ligase on singly nicked dsDNA, fills dsDNA gaps (3- or 4- nucleotide gaps, prefers a 5'-phosphate at the gap distal end, prefers dNTPs over rNTPs) , has DNA-directed DNA polymerase activity (templated primer extension) and DNA-directed RNA polymerase activity , adds 1 or 2 non-templated rNTP (or less well dNTP) to ssDNA or blunt-end dsDNA (primer extension). Has 3' resection activity, removi [...] | 0.709 |
DR97_6287 | pfpI | DR97_6287 | DR97_3321 | annotation not available | pfpI: intracellular protease, PfpI family protein | 0.773 |
DR97_6288 | DR97_6287 | DR97_6288 | DR97_6287 | Putative competence-damaged protein; Belongs to the CinA family | annotation not available | 0.790 |
DR97_6288 | DR97_6289 | DR97_6288 | DR97_6289 | Putative competence-damaged protein; Belongs to the CinA family | annotation not available | 0.847 |
DR97_6288 | DR97_6290 | DR97_6288 | DR97_6290 | Putative competence-damaged protein; Belongs to the CinA family | Hypothetical protein; Putative membrane protein; phospholipase_D-nuclease N-terminal family protein | 0.830 |
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