Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dnaN | pslN | DR97_2951 | DR97_6306 | Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for proces [...] | annotation not available | 0.700 |
ku | ligD | DR97_6276 | DR97_6291 | Ku domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Stimulates rNTP addition to DSB and end joining (ligation) of linear DNA by LigD, on 3'-overhangs and probably also 5'-overhangs and blunt dsDNA breaks. Binds both ends of linear dsDNA protecting it from exonuclease activity | Bifunctional non-homologous end joining protein ligd; With Ku probably forms a non-homologous end joining (NHEJ) repair enzyme, which repairs dsDNA breaks (DSB) with reduced fidelity. Acts as a DNA ligase on singly nicked dsDNA, fills dsDNA gaps (3- or 4- nucleotide gaps, prefers a 5'-phosphate at the gap distal end, prefers dNTPs over rNTPs) , has DNA-directed DNA polymerase activity (templated primer extension) and DNA-directed RNA polymerase activity , adds 1 or 2 non-templated rNTP (or less well dNTP) to ssDNA or blunt-end dsDNA (primer extension). Has 3' resection activity, removi [...] | 0.988 |
ku | pslN | DR97_6276 | DR97_6306 | Ku domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Stimulates rNTP addition to DSB and end joining (ligation) of linear DNA by LigD, on 3'-overhangs and probably also 5'-overhangs and blunt dsDNA breaks. Binds both ends of linear dsDNA protecting it from exonuclease activity | annotation not available | 0.630 |
ligD | ku | DR97_6291 | DR97_6276 | Bifunctional non-homologous end joining protein ligd; With Ku probably forms a non-homologous end joining (NHEJ) repair enzyme, which repairs dsDNA breaks (DSB) with reduced fidelity. Acts as a DNA ligase on singly nicked dsDNA, fills dsDNA gaps (3- or 4- nucleotide gaps, prefers a 5'-phosphate at the gap distal end, prefers dNTPs over rNTPs) , has DNA-directed DNA polymerase activity (templated primer extension) and DNA-directed RNA polymerase activity , adds 1 or 2 non-templated rNTP (or less well dNTP) to ssDNA or blunt-end dsDNA (primer extension). Has 3' resection activity, removi [...] | Ku domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Stimulates rNTP addition to DSB and end joining (ligation) of linear DNA by LigD, on 3'-overhangs and probably also 5'-overhangs and blunt dsDNA breaks. Binds both ends of linear dsDNA protecting it from exonuclease activity | 0.988 |
ligD | pslN | DR97_6291 | DR97_6306 | Bifunctional non-homologous end joining protein ligd; With Ku probably forms a non-homologous end joining (NHEJ) repair enzyme, which repairs dsDNA breaks (DSB) with reduced fidelity. Acts as a DNA ligase on singly nicked dsDNA, fills dsDNA gaps (3- or 4- nucleotide gaps, prefers a 5'-phosphate at the gap distal end, prefers dNTPs over rNTPs) , has DNA-directed DNA polymerase activity (templated primer extension) and DNA-directed RNA polymerase activity , adds 1 or 2 non-templated rNTP (or less well dNTP) to ssDNA or blunt-end dsDNA (primer extension). Has 3' resection activity, removi [...] | annotation not available | 0.643 |
pslA | pslD | DR97_6320 | DR97_6317 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.996 |
pslA | pslH | DR97_6320 | DR97_6313 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.962 |
pslA | pslJ | DR97_6320 | DR97_6311 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.970 |
pslA | pslK | DR97_6320 | DR97_6310 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.936 |
pslA | pslL | DR97_6320 | DR97_6308 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.962 |
pslA | pslM | DR97_6320 | DR97_6307 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.815 |
pslA | pslN | DR97_6320 | DR97_6306 | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | annotation not available | 0.789 |
pslD | pslA | DR97_6317 | DR97_6320 | annotation not available | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | 0.996 |
pslD | pslH | DR97_6317 | DR97_6313 | annotation not available | annotation not available | 0.990 |
pslD | pslJ | DR97_6317 | DR97_6311 | annotation not available | annotation not available | 0.995 |
pslD | pslK | DR97_6317 | DR97_6310 | annotation not available | annotation not available | 0.985 |
pslD | pslL | DR97_6317 | DR97_6308 | annotation not available | annotation not available | 0.939 |
pslD | pslN | DR97_6317 | DR97_6306 | annotation not available | annotation not available | 0.646 |
pslH | pslA | DR97_6313 | DR97_6320 | annotation not available | Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase | 0.962 |
pslH | pslD | DR97_6313 | DR97_6317 | annotation not available | annotation not available | 0.990 |
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