STRINGSTRING
srpR protein (Pseudomonas aeruginosa) - STRING interaction network
"srpR" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpRannotation not available (197 aa)    
Predicted Functional Partners:
cmpB
annotation not available (254 aa)
           
  0.854
DR97_644
annotation not available (279 aa)
   
        0.768
yybR_2
annotation not available (146 aa)
   
   
  0.658
traG
Uncharacterized protein (249 aa)
           
  0.628
DR97_1748
phage_pRha- phage regulatory , Rha family protein (276 aa)
           
  0.551
amrR
annotation not available (210 aa)
   
        0.488
ydjA_2
annotation not available (186 aa)
   
   
  0.485
DR97_5513
Relaxase; ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (604 aa)
           
  0.459
DR97_1840
Relaxase; ICE_TraI_Pfluor- integrating conjugative element relaxase, PFGI-1 class (639 aa)
           
  0.459
DR97_646
Uncharacterized protein (159 aa)
              0.453
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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