STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT74593.1Capsular polysaccharide transport system ATP-binding protein. (219 aa)    
Predicted Functional Partners:
SIT74588.1
Capsular polysaccharide transport system permease protein.
 
 
 0.999
SIT88327.1
ABC-type polysaccharide/polyol phosphate export permease.
 
 0.999
SIT82809.1
Capsular polysaccharide export protein.
 
  
 0.966
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family.
  
    0.855
SIT87494.1
Polysaccharide export outer membrane protein.
 
  
 0.832
SIT82802.1
Capsular polysaccharide export protein.
 
   
 0.825
SIT84857.1
Sulfotransferase family protein.
 
  
 0.794
SIT88345.1
Glycosyl transferase family 2.
 
  
 0.793
SIT88340.1
Glycosyl transferase family 2.
 
  
 0.792
SIT81747.1
Hypothetical protein.
 
    0.781
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.