STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT77318.1Phytoene/squalene synthetase. (255 aa)    
Predicted Functional Partners:
SIT87918.1
Phytoene desaturase.
  
 
 0.918
SIT88932.1
1-hydroxycarotenoid 3,4-desaturase.
  
 
 0.918
SIT86208.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.894
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.880
SIT77314.1
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
    
 0.880
SIT89052.1
Geranylgeranyl reductase.
  
 
 0.854
SIT88727.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.841
SIT88935.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.841
SIT79080.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
 0.830
SIT87914.1
Phytoene synthase.
    
  0.826
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
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