STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT83361.1Transcriptional regulator, contains XRE-family HTH domain. (123 aa)    
Predicted Functional Partners:
SIT83354.1
Myo-inositol-1(or 4)-monophosphatase.
       0.744
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.688
SIT84707.1
Hypothetical protein.
  
     0.685
SIT79542.1
Beta-barrel assembly machine subunit BamE.
  
     0.655
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.621
SIT84783.1
Hypothetical protein.
  
     0.609
SIT88382.1
Metal dependent phosphohydrolase.
  
     0.600
SIT89008.1
Methyltransferase domain-containing protein.
  
     0.589
SIT84778.1
N-terminal double-transmembrane domain-containing protein.
  
     0.575
SIT87455.1
HAD-superfamily class IIA hydrolase, TIGR01459.
  
     0.574
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.