STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT85483.1Transcriptional regulator, LacI family. (338 aa)    
Predicted Functional Partners:
SIT88652.1
Glutamate synthase (NADPH) large subunit.
    
 
 0.949
SIT90990.1
Phosphocarrier protein.
   
 
 0.827
SIT85494.1
L-iditol 2-dehydrogenase.
 
 
   0.818
SIT85492.1
Gluconate 5-dehydrogenase.
 
 
   0.775
hisD-2
Sulfopropanediol 3-dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
   
 0.678
SIT83899.1
Signal transduction histidine kinase.
    
 
 0.527
SIT85499.1
Nucleotide-binding universal stress protein, UspA family.
 
     0.497
SIT85480.1
Hypothetical protein.
       0.459
cysC
Adenylylsulfate kinase /sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
    
   0.451
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
   0.443
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
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