STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT87724.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
SIT77206.1
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.815
SIT77200.1
Type I restriction enzyme, S subunit.
  
    0.811
SIT87727.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
     0.748
SIT87874.1
Lipid A oxidase.
  
    0.566
SIT77268.1
Opacity protein.
   
    0.482
SIT88394.1
Opacity protein.
   
    0.482
SIT90360.1
Opacity protein.
   
    0.482
SIT87721.1
Transcriptional regulator, LacI family.
       0.444
SIT85792.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
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