STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT87770.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (375 aa)    
Predicted Functional Partners:
SIT87757.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.999
SIT87761.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 0.999
SIT87756.1
ABC-type uncharacterized transport system, auxiliary component.
 
 
 0.980
SIT78023.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.964
SIT82315.1
Chemotaxis protein CheX.
   
  0.964
SIT88362.1
Lipopolysaccharide export system ATP-binding protein.
  
  0.572
SIT88652.1
Glutamate synthase (NADPH) large subunit.
       0.556
SIT80548.1
iron(III) transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
   
  0.472
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
   
  0.472
SIT88684.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
   
  0.472
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
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