STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT90314.1Hypothetical protein. (568 aa)    
Predicted Functional Partners:
SIT90310.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.978
SIT90303.1
Response regulator receiver protein.
 
  
 0.967
SIT90379.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.936
SIT90317.1
Phospholipase D1/2.
 
     0.904
SIT87739.1
PAS/PAC sensor hybrid histidine kinase; Manually curated.
 
  
 0.830
SIT83899.1
Signal transduction histidine kinase.
    
 0.802
SIT90307.1
Hypothetical protein.
       0.773
SIT79766.1
Methyl-accepting chemotaxis protein.
 
  
 0.736
SIT90353.1
PRC-barrel domain-containing protein.
  
     0.688
SIT90289.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.676
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.