STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT90684.1Uncharacterized conserved protein YgbK, DUF1537 family. (446 aa)    
Predicted Functional Partners:
SIT90680.1
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
   
 0.952
SIT90685.1
NADP oxidoreductase coenzyme F420-dependent.
 
   
 0.902
SIT90689.1
Transcriptional regulator, GntR family.
 
     0.844
SIT90691.1
Hypothetical protein.
 
     0.789
SIT90695.1
Predicted dehydrogenase.
 
     0.734
SIT90702.1
Predicted lipoprotein.
  
     0.603
SIT84760.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
  
  
 0.537
SIT90175.1
3-hydroxyisobutyrate dehydrogenase.
 
  
 0.480
SIT78831.1
Putative tricarboxylic transport membrane protein.
 
     0.474
SIT76273.1
Hypothetical protein.
 
     0.472
Your Current Organism:
Yoonia rosea
NCBI taxonomy Id: 287098
Other names: CIP 107851, DSM 29591, KMM 6003, LMG 22534, LMG:22534, Loktanella rosea, Loktanella rosea Ivanova et al. 2005, Y. rosea, strain Fg36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.