STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN39497.1Sugar phosphate isomerase/epimerase. (353 aa)    
Predicted Functional Partners:
SFN39484.1
Predicted dehydrogenase.
 
 
  0.957
SFN39510.1
Protein of unknown function.
 
     0.832
SFN39446.1
Choline dehydrogenase.
 
     0.829
SFN39472.1
Nucleoside transporter.
 
    0.732
SFN92237.1
Choline dehydrogenase.
 
     0.729
SFN39459.1
Sugar phosphate isomerase/epimerase.
 
     0.703
SFN39434.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.651
SFN92219.1
Sugar phosphate isomerase/epimerase.
 
     0.642
SFN46127.1
Hypothetical protein.
 
 
  0.591
SFN91508.1
Hydroxypyruvate isomerase.
 
  
  0.556
Your Current Organism:
Salegentibacter flavus
NCBI taxonomy Id: 287099
Other names: CIP 107843, DSM 17794, KMM 6000, S. flavus, Salegentibacter flavus Ivanova et al. 2006 emend. Hahnke et al. 2016, strain Fg 69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.