Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN45252.1 | SFN45270.1 | SAMN05660413_01093 | SAMN05660413_01094 | Topoisomerase-4 subunit B. | Hypothetical protein. | 0.795 |
SFN45252.1 | SFN45284.1 | SAMN05660413_01093 | SAMN05660413_01095 | Topoisomerase-4 subunit B. | Topoisomerase-4 subunit A. | 0.998 |
SFN45252.1 | SFN62276.1 | SAMN05660413_01093 | SAMN05660413_01914 | Topoisomerase-4 subunit B. | Glutamate synthase (ferredoxin). | 0.626 |
SFN45252.1 | SFN96960.1 | SAMN05660413_01093 | SAMN05660413_03281 | Topoisomerase-4 subunit B. | DNA topoisomerase-1. | 0.903 |
SFN45252.1 | SFN97893.1 | SAMN05660413_01093 | SAMN05660413_03315 | Topoisomerase-4 subunit B. | Hypothetical protein. | 0.610 |
SFN45252.1 | argS | SAMN05660413_01093 | SAMN05660413_00285 | Topoisomerase-4 subunit B. | arginyl-tRNA synthetase. | 0.657 |
SFN45252.1 | gyrA | SAMN05660413_01093 | SAMN05660413_01115 | Topoisomerase-4 subunit B. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.988 |
SFN45252.1 | mscL | SAMN05660413_01093 | SAMN05660413_01096 | Topoisomerase-4 subunit B. | Large conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.804 |
SFN45252.1 | recF | SAMN05660413_01093 | SAMN05660413_02430 | Topoisomerase-4 subunit B. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.637 |
SFN45252.1 | ychF | SAMN05660413_01093 | SAMN05660413_01092 | Topoisomerase-4 subunit B. | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.658 |
SFN45270.1 | SFN45252.1 | SAMN05660413_01094 | SAMN05660413_01093 | Hypothetical protein. | Topoisomerase-4 subunit B. | 0.795 |
SFN45270.1 | SFN45284.1 | SAMN05660413_01094 | SAMN05660413_01095 | Hypothetical protein. | Topoisomerase-4 subunit A. | 0.796 |
SFN45270.1 | mscL | SAMN05660413_01094 | SAMN05660413_01096 | Hypothetical protein. | Large conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.784 |
SFN45270.1 | ychF | SAMN05660413_01094 | SAMN05660413_01092 | Hypothetical protein. | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.424 |
SFN45284.1 | SFN45252.1 | SAMN05660413_01095 | SAMN05660413_01093 | Topoisomerase-4 subunit A. | Topoisomerase-4 subunit B. | 0.998 |
SFN45284.1 | SFN45270.1 | SAMN05660413_01095 | SAMN05660413_01094 | Topoisomerase-4 subunit A. | Hypothetical protein. | 0.796 |
SFN45284.1 | argS | SAMN05660413_01095 | SAMN05660413_00285 | Topoisomerase-4 subunit A. | arginyl-tRNA synthetase. | 0.646 |
SFN45284.1 | mscL | SAMN05660413_01095 | SAMN05660413_01096 | Topoisomerase-4 subunit A. | Large conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. | 0.784 |
SFN45284.1 | ychF | SAMN05660413_01095 | SAMN05660413_01092 | Topoisomerase-4 subunit A. | Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.635 |
SFN62276.1 | SFN45252.1 | SAMN05660413_01914 | SAMN05660413_01093 | Glutamate synthase (ferredoxin). | Topoisomerase-4 subunit B. | 0.626 |
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