STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAStarch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (469 aa)    
Predicted Functional Partners:
SFN64075.1
Glucose-1-phosphate adenylyltransferase.
 
 
 0.998
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.998
SFN25839.1
Starch synthase.
  
  
  0.958
SFN59738.1
Alpha amylase, catalytic domain.
 
 
 0.916
SFN91551.1
Alpha-amylase.
  
 
 0.784
SFN92762.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
 0.784
SFN55368.1
Hypothetical protein.
   
    0.616
SFN59752.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.557
SFN64109.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
       0.479
SFN39036.1
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase.
    
 0.454
Your Current Organism:
Salegentibacter flavus
NCBI taxonomy Id: 287099
Other names: CIP 107843, DSM 17794, KMM 6000, S. flavus, Salegentibacter flavus Ivanova et al. 2006 emend. Hahnke et al. 2016, strain Fg 69
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