STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093437Sphingomyelin phosphodiesterase 4. (648 aa)    
Predicted Functional Partners:
LOC107085961
Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.664
smpd3
Sphingomyelin phosphodiesterase 3, neutral.
      
 0.664
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
      
 0.664
LPCAT1
Lysophosphatidylcholine acyltransferase 1.
      
 0.663
pcyt1b
Phosphate cytidylyltransferase 1, choline, beta a.
      
 0.662
smpd1
Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide.
      
 0.662
ncln
Nicalin.
   
  
 0.660
pld2
Phospholipase.
      
 0.644
LOC107091881
Phosphate cytidylyltransferase 1, choline, alpha a.
      
 0.629
TMEM43
Uncharacterized protein.
      
 0.609
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.