STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093400Uncharacterized protein. (1139 aa)    
Predicted Functional Partners:
scoc
Short coiled-coil protein a.
      
 0.573
txndc12
Thioredoxin domain containing 12 (endoplasmic reticulum).
      
 0.559
LRFN2
Leucine rich repeat and fibronectin type III domain containing 2.
      
 0.416
ENSCVAP00000015196
Uncharacterized protein.
   
  
 0.411
ncoa6
Nuclear receptor coactivator 6.
      
 0.405
ttll11
Tubulin tyrosine ligase-like family, member 11.
   
  
 0.401
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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