Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107093391Collagen beta(1-O)galactosyltransferase 1. (610 aa)    
Predicted Functional Partners:
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.950
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.950
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.950
col6a2
Collagen, type VI, alpha 2.
   
 0.727
LOC107083472
Matrix metallopeptidase 13b.
    
 
 0.509
LOC107083460
Matrix metallopeptidase 20a (enamelysin).
    
 
 0.509
ENSCVAP00000025151
Uncharacterized protein.
    
  0.485
LOC107102995
Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.
    
  0.485
LOC107089716
Collagen beta(1-O)galactosyltransferase 2.
     
  0.477
lhpp
Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.
      
 0.458
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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