Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pet100PET100 cytochrome c oxidase chaperone. (75 aa)    
Predicted Functional Partners:
NDUFB1
NADH:ubiquinone oxidoreductase subunit B1.
   
  
 0.876
pum2
Pumilio RNA-binding family member 2.
    
 
 0.795
pum1
Pumilio RNA-binding family member 1.
    
 
 0.795
ndufb4
NADH:ubiquinone oxidoreductase subunit B4.
   
  
 0.785
ENSCVAP00000000097
Uncharacterized protein.
      
 0.752
LOC107087345
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.726
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
   
 
 0.694
LOC107099897
Cytochrome C oxidase assembly factor 5.
   
  
 0.694
EFCC1
EF-hand and coiled-coil domain containing 1.
      
 0.680
spcs1
Signal peptidase complex subunit 1.
      
 0.673
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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