Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107081658Apolipoprotein Bb, tandem duplicate 2. (3721 aa)    
Predicted Functional Partners:
LOC107082965
Uncharacterized protein.
   
 0.972
LOC107082973
Uncharacterized protein.
   
 0.972
mttp
Microsomal triglyceride transfer protein.
   
 0.941
LOC107082950
Apolipoprotein Eb.
   
 0.931
LOC107095516
Apolipoprotein Ea.
   
 0.884
cetp
Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.
   
 
 0.856
apoa4
Apolipoprotein A-Ib.
   
 0.842
scarb1
Scavenger receptor class B, member 1; Belongs to the CD36 family.
    
 0.760
ENSCVAP00000030193
Uncharacterized protein.
   
 
 0.753
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.746
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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