STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107081658Apolipoprotein Bb, tandem duplicate 2. (3721 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
   
 
 0.954
ENSCVAP00000031587
Uncharacterized protein.
   
 
 0.954
ENSCVAP00000031602
Uncharacterized protein.
   
 
 0.954
mttp
Microsomal triglyceride transfer protein.
   
 0.882
LOC107082965
Uncharacterized protein.
   
 0.826
LOC107082973
Uncharacterized protein.
   
 0.826
plg
Plasminogen; Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated b [...]
   
 0.775
LOC107082950
Apolipoprotein Eb.
   
 0.752
scarb1
Scavenger receptor class B, member 1; Belongs to the CD36 family.
    
 0.712
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.703
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.