Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC107096283Dual specificity phosphatase 19b. (203 aa)    
Predicted Functional Partners:
nol9
Nucleolar protein 9.
   
  
 0.721
map2k7
Mitogen-activated protein kinase kinase 7.
    
 
 0.713
vstm4
V-set and transmembrane domain containing 4a.
    
 
 0.619
LOC107087501
5-aminolevulinate synthase.
   
   0.598
alas1
5-aminolevulinate synthase.
   
   0.598
tbccd1
TBCC domain containing 1.
      
 0.553
LOC107083286
Peptidylprolyl isomerase.
   
  
 0.552
LOC107092016
Progestin and adipoQ receptor family member IIIb.
      
 0.549
paqr3
Progestin and adipoQ receptor family member IIIa.
      
 0.549
gins1
GINS complex subunit 1 (Psf1 homolog).
   
 
 0.543
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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