Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rdm1Zgc:103564. (273 aa)    
Predicted Functional Partners:
ENSCVAP00000006239
Ig-like domain-containing protein.
      
 0.783
rad52
RAD52 homolog, DNA repair protein.
    
 
 0.717
dnajc12
DnaJ (Hsp40) homolog, subfamily C, member 12.
      
 0.649
LOC107085406
FAST kinase domains 3.
      
 0.604
LOC107098873
Cardiomyopathy associated 5.
      
 0.604
ENSCVAP00000013353
Mesoderm posterior aa.
      
 0.558
tmem72
Transmembrane protein 72.
      
 0.558
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.550
daw1
WD_REPEATS_REGION domain-containing protein.
      
 0.531
ENSCVAP00000011358
Uncharacterized protein.
      
 0.526
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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