STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem240Transmembrane protein 240a. (175 aa)    
Predicted Functional Partners:
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.916
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.907
WDR33
WD repeat domain 33.
    
 0.888
ENSCVAP00000028190
Symplekin.
   
 
 0.875
LOC107093479
FIP1 like 1b (S. cerevisiae).
    
 
 0.863
papolg
Poly(A) polymerase gamma.
    
 
 0.863
LOC107086420
Uncharacterized protein.
    
 
 0.859
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.855
gtf2b
General transcription factor IIB.
   
 0.854
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 
 0.844
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.