Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093196Uncharacterized protein. (473 aa)    
Predicted Functional Partners:
LOC107084970
TIR domain-containing protein; Belongs to the Toll-like receptor family.
   
 
 0.670
LOC107084938
TIR domain-containing protein.
   
 
 0.670
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
     
 0.587
LYZ
Lysozyme; Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Belongs to the glycosyl hydrolase 22 family.
   
 
 0.552
ENSCVAP00000013360
Peptidase S1 domain-containing protein.
   
 
 0.507
LOC107097201
Si:dkey-32n7.4.
     
 0.500
ENSCVAP00000010465
Liver-expressed antimicrobial peptide 2.
      
 0.464
apoa4
Apolipoprotein A-Ib.
     
 0.463
itgb2
Integrin beta.
   
 
  0.459
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 
  0.459
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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