STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093196Uncharacterized protein. (473 aa)    
Predicted Functional Partners:
ENSCVAP00000013360
Peptidase S1 domain-containing protein.
   
 
 0.673
LOC107082965
Uncharacterized protein.
   
 0.586
LOC107082973
Uncharacterized protein.
   
 0.586
LOC107084970
TIR domain-containing protein; Belongs to the Toll-like receptor family.
   
 
 0.526
LOC107084938
TIR domain-containing protein.
   
 
 0.526
apof
Apolipoprotein F.
     
 0.503
c9
Complement component 9.
      
 0.489
LOC107083128
Si:ch211-153j24.3.
      
 0.489
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
     
 0.485
LOC107092405
V-fos FBJ murine osteosarcoma viral oncogene homolog Aa.
      
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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