hhip protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hhip

Hedgehog interacting protein. (696 aa)

Predicted Functional Partners:

shh

0.984

ihh

0.982

LOC107103858

0.982

LOC107086754

0.977

LOC107091888

0.804

ENSCVAP00000016004

0.721

ENSCVAP00000010755

0.693

ptch2

0.622

dym

0.611

ptch1

0.589

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000010755	hhip	ENSCVAP00000010755	ENSCVAP00000001050	Uncharacterized protein.	Hedgehog interacting protein.	0.693
ENSCVAP00000016004	hhip	ENSCVAP00000016004	ENSCVAP00000001050	Uncharacterized protein.	Hedgehog interacting protein.	0.721
LOC107086754	hhip	ENSCVAP00000032106	ENSCVAP00000001050	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Hedgehog interacting protein.	0.977
LOC107086754	ptch1	ENSCVAP00000032106	ENSCVAP00000009752	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Patched 1.	0.985
LOC107086754	ptch2	ENSCVAP00000032106	ENSCVAP00000024886	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Patched 2.	0.990
LOC107091888	hhip	ENSCVAP00000016690	ENSCVAP00000001050	HH_signal domain-containing protein.	Hedgehog interacting protein.	0.804
LOC107091888	ptch1	ENSCVAP00000016690	ENSCVAP00000009752	HH_signal domain-containing protein.	Patched 1.	0.806
LOC107091888	ptch2	ENSCVAP00000016690	ENSCVAP00000024886	HH_signal domain-containing protein.	Patched 2.	0.806
LOC107103858	hhip	ENSCVAP00000021563	ENSCVAP00000001050	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Hedgehog interacting protein.	0.982
LOC107103858	ptch1	ENSCVAP00000021563	ENSCVAP00000009752	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Patched 1.	0.980
LOC107103858	ptch2	ENSCVAP00000021563	ENSCVAP00000024886	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Patched 2.	0.983
dym	hhip	ENSCVAP00000029348	ENSCVAP00000001050	Dymeclin.	Hedgehog interacting protein.	0.611
hhip	ENSCVAP00000010755	ENSCVAP00000001050	ENSCVAP00000010755	Hedgehog interacting protein.	Uncharacterized protein.	0.693
hhip	ENSCVAP00000016004	ENSCVAP00000001050	ENSCVAP00000016004	Hedgehog interacting protein.	Uncharacterized protein.	0.721
hhip	LOC107086754	ENSCVAP00000001050	ENSCVAP00000032106	Hedgehog interacting protein.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.977
hhip	LOC107091888	ENSCVAP00000001050	ENSCVAP00000016690	Hedgehog interacting protein.	HH_signal domain-containing protein.	0.804
hhip	LOC107103858	ENSCVAP00000001050	ENSCVAP00000021563	Hedgehog interacting protein.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.982
hhip	dym	ENSCVAP00000001050	ENSCVAP00000029348	Hedgehog interacting protein.	Dymeclin.	0.611
hhip	ihh	ENSCVAP00000001050	ENSCVAP00000004296	Hedgehog interacting protein.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.982
hhip	ptch1	ENSCVAP00000001050	ENSCVAP00000009752	Hedgehog interacting protein.	Patched 1.	0.589