STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmaaMetabolism of cobalamin associated A. (375 aa)    
Predicted Functional Partners:
mmut
Methylmalonyl CoA mutase.
  
 
 0.954
mcee
Methylmalonyl CoA epimerase.
  
  
 0.814
pccb
Propionyl-CoA carboxylase subunit beta.
  
   
 0.713
mmab
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
      
 0.665
lmbrd1
LMBR1 domain containing 1.
      
 0.660
mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
      
 0.635
mmachc
Metabolism of cobalamin associated C.
   
  
 0.612
setd3
Protein-histidine N-methyltransferase.
    
 0.601
setd4
Uncharacterized protein.
    
 0.601
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.598
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.