Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094656Zinc finger protein 827. (712 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
    
 0.892
brca1
Uncharacterized protein.
    
 
 0.771
srbd1
S1 RNA binding domain 1.
    
 
 0.720
naif1
Nuclear apoptosis inducing factor 1.
      
 0.674
rnf166
Ring finger protein 166.
    
 0.666
znf276
Zinc finger protein 276.
      
 0.609
LOC107087496
DNA cross-link repair 1B.
    
 
 0.602
DCLRE1B
DNA cross-link repair 1B.
    
 
 0.602
znf438
Zinc finger protein 438.
      
 0.573
klhdc4
Kelch domain containing 4.
      
 0.545
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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