STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094656Zinc finger protein 827. (712 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
    
 0.835
VEZF1
Vascular endothelial zinc finger 1.
  
   
 0.679
srbd1
S1 RNA binding domain 1.
    
 
 0.643
naif1
Nuclear apoptosis inducing factor 1.
      
 0.631
rnf166
Ring finger protein 166.
   
 0.575
znf276
Zinc finger protein 276.
      
0.554
nr2c2
Nuclear receptor subfamily 2, group C, member 2.
    
 0.527
nr2c1
Nuclear receptor subfamily 2, group C, member 1.
    
 0.525
PCBP2
Poly(rC) binding protein 2.
    
 
 0.501
LOC107094832
Poly(rC) binding protein 2.
    
 
 0.501
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.