STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pax9Paired box 9. (338 aa)    
Predicted Functional Partners:
meox2
Mesenchyme homeobox 2a.
    
 
 0.657
msx1
Muscle segment homeobox 1a.
    
 
 0.624
ankmy1
Uncharacterized protein.
      
 0.461
nfe2
Nuclear factor, erythroid 2.
      
 0.451
nkx3-2
NK3 homeobox 2.
      
 0.450
hand2
Heart and neural crest derivatives expressed 2.
      
 0.449
meox1
Mesenchyme homeobox 1.
    
 
 0.426
pitx2
Homeobox protein.
   
  
 0.412
LOC107086590
Muscle segment homeobox 3.
    
 
 0.405
LOC107100171
GATA binding protein 1a.
   
  
 0.403
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.