STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a21Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family. (297 aa)    
Predicted Functional Partners:
mipol1
Mirror-image polydactyly 1.
   
  
 0.653
LOC107087514
T-box transcription factor 20.
    
   0.595
LOC107095624
Uncharacterized protein.
      
 0.508
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.508
neurl1
Neuralized E3 ubiquitin protein ligase 1Aa.
      
 0.508
ENSCVAP00000027479
Zinc finger, CCHC domain containing 14.
    
 
 0.485
UNC79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.483
mrpl57
Mitochondrial ribosomal protein L57.
      
 0.408
mrpl1
Mitochondrial ribosomal protein L1.
   
  
 0.405
pax9
Paired box 9.
      
 0.400
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.