STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bivmBasic, immunoglobulin-like variable motif containing. (496 aa)    
Predicted Functional Partners:
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.963
ercc3
Excision repair cross-complementation group 3.
   
 0.955
ercc2
Excision repair cross-complementation group 2.
   
 0.941
ercc6
Excision repair cross-complementation group 6.
   
 0.940
fancm
Uncharacterized protein.
   
 0.911
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.890
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.888
LOC107093675
General transcription factor IIH subunit.
    
 0.886
ercc4
Excision repair cross-complementation group 4.
   
 0.877
ercc1
Excision repair cross-complementation group 1.
   
 0.846
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.