STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tankTRAF family member-associated NFKB activator. (335 aa)    
Predicted Functional Partners:
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.996
Ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.994
tbk1
TANK-binding kinase 1.
   
 0.991
tradd
Tnfrsf1a-associated via death domain.
     
 0.964
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.961
ENSCVAP00000017074
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
    
 
 0.957
LOC107093789
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
   
 0.948
tbkbp1
TBK1 binding protein 1.
     
 0.929
LOC107093106
Smith-Magenis syndrome chromosome region, candidate 8a.
     
 0.909
smcr8
UDENN FLCN/SMCR8-type domain-containing protein.
     
 0.909
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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