STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch1G patch domain containing 1. (780 aa)    
Predicted Functional Partners:
wdr83
WD repeat domain containing 83.
    
 
 0.923
ENSCVAP00000009384
Coiled-coil domain containing 12.
    
 0.913
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.878
Srrm1
PWI domain-containing protein.
     
 0.839
plrg1
Pleiotropic regulator 1.
    
 
 0.838
yju2
YJU2 splicing factor homolog.
    
  0.824
LOC107100820
Src homology 2 domain containing transforming protein D, a.
    
  0.792
mtrex
Mtr4 exosome RNA helicase.
   
 0.775
prpf19
Pre-mRNA processing factor 19.
    
 
 0.764
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
  0.763
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.